Protein–peptide docking using CABS-dock and contact information
نویسندگان
چکیده
منابع مشابه
Highly Flexible Protein-Peptide Docking Using CABS-Dock.
Protein-peptide molecular docking is a difficult modeling problem. It is even more challenging when significant conformational changes that may occur during the binding process need to be predicted. In this chapter, we demonstrate the capabilities and features of the CABS-dock server for flexible protein-peptide docking. CABS-dock allows highly efficient modeling of full peptide flexibility and...
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BACKGROUND The characterization of protein-peptide interactions is a challenge for computational molecular docking. Protein-peptide docking tools face at least two major difficulties: (1) efficient sampling of large-scale conformational changes induced by binding and (2) selection of the best models from a large set of predicted structures. In this paper, we merge an efficient sampling techniqu...
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Despite considerable efforts, structural prediction of proteinpeptide complexes is still a very challenging task, mainly due to two reasons: high flexibility of the peptides and transient character of their interactions with proteins. Recently we have developed an automated web server CABS-dock (http://biocomp.chem.uw.edu.pl/CABSdock), which conducts flexible protein-peptide docking without any...
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The protein-protein interactions (PPIs) are crucial for understanding the majority of cellular processes. PPIs play important role in gene transcription regulation, cellular signaling, molecular basis of immune response and more. Moreover, a disruption of these mechanisms is frequently postulated as a possible cause of diseases such as Alzheimers or cancer. For many of biologically relevant cas...
متن کاملModeling of protein-peptide interactions using the CABS-dock web server for binding site search and flexible docking.
Protein-peptide interactions play essential functional roles in living organisms and their structural characterization is a hot subject of current experimental and theoretical research. Computational modeling of the structure of protein-peptide interactions is usually divided into two stages: prediction of the binding site at a protein receptor surface, and then docking (and modeling) the pepti...
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ژورنال
عنوان ژورنال: Briefings in Bioinformatics
سال: 2018
ISSN: 1467-5463,1477-4054
DOI: 10.1093/bib/bby080